An Algorithm For Protein Hinge Prediction Using Elastic Network Models

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References:

If you use this program, please cite the following::
Emekli U, Schneidman-Duhovny D, Wolfson HJ, Nussinov R, Haliloglu T. (2008) HingeProt: Automated Prediction of Hinges in Protein Structures. Proteins, 70(4):1219-27.

Citations:

  • Protein dynamics analysis reveals that missense mutations in cancer-related genes appear frequently on hinge-neighboring residues Sayilgan, Jan Fehmi; Haliloglu, Turkan; Gonen, Mehmet PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS Volume: 87 Issue: 6 Pages: 512-519 Published: JUN 2019
  • Analyzing Change in Protein Stability Associated with Single Point Deletions in a Newly Defined Protein Structure Database Banerjee, Anupam; Levy, Yaakov; Mitra, Pralay JOURNAL OF PROTEOME RESEARCH Volume: 18 Issue: 3 Pages: 1402-1410 Published: MAR 2019
  • Interaction of the GTPase Elongation Factor Like-1 with the Shwachman-Diamond Syndrome Protein and Its Missense Mutations Gijsbers, Abril; Carolina Montagut, Diana; Mendez-Godoy, Alfonso; et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES Volume: 19 Issue: 12 Article Number: 4012 Published: DEC 2018
  • The importance of alpha-CT and Salt bridges in the Formation of Insulin and its Receptor Complex by Computational Simulation Dehghan-Shasaltaneh, Marzieh; Lanjanian, Hossein; Riazi, Gholam Hossein; et al. IRANIAN JOURNAL OF PHARMACEUTICAL RESEARCH Volume: 17 Issue: 1 Pages: 63-74 Published: WIN 2018
  • RapidRMSD: rapid determination of RMSDs corresponding to motions of flexible molecules Neveu, Emilie; Popov, Petr; Hoffmann, Alexandre; et al. BIOINFORMATICS Volume: 34 Issue: 16 Pages: 2757-2765 Published: AUG 15 2018
  • Deciphering the role of dimer interface in intrinsic dynamics and allosteric pathways underlying the functional transformation of DNMT3A Liang, Zhongjie; Hu, Junchi; Yan, Wenying; et al. BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS Volume: 1862 Issue: 7 Pages: 1667-1679 Published: JUL 2018
  • An auto-inhibitory helix in CTP:phosphocholine cytidylyltransferase hijacks the catalytic residue and constrains a pliable, domain-bridging helix pair Ramezanpour, Mohsen; Lee, Jaeyong; Taneva, Svetla G.; et al. JOURNAL OF BIOLOGICAL CHEMISTRY Volume: 293 Issue: 18 Pages: 7070-7084 Published: MAY 4 2018
  • NAHAL-Flex: A Numerical and Alphabetical Hinge Detection Algorithm for Flexible Protein Structure Alignment Fotoohifiroozabadi, Samira; Mohamad, Mohd Saberi; Deris, Safaai IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS Volume: 15 Issue: 3 Pages: 934-943 Published: MAY-JUN 2018
  • Integrative Structural Investigation on the Architecture of Human Importin4_Histone H3/1-14_Asf1a Complex and Its Histone H3 Tail Binding Yoon, Jungmin; Kim, Seung Joong; An, Sojin; et al. JOURNAL OF MOLECULAR BIOLOGY Volume: 430 Issue: 6 Pages: 822-841 Published: MAR 16 2018
  • Role of pncA gene mutations W68R and W68G in pyrazinamide resistance Aggarwal, Mansi; Singh, Aditi; Grover, Sonam; et al. JOURNAL OF CELLULAR BIOCHEMISTRY Volume: 119 Issue: 3 Pages: 2567-2578 Published: MAR 2018
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  • Structural and Functional Implications of Human Transforming Growth Factor beta-Induced Protein, TGFBIp, in Corneal Dystrophies Garcia-Castellanos, Raquel; Nielsen, Nadia Sukusu; Runager, Kasper; et al. STRUCTURE Volume: 25 Issue: 11 Pages: 1740-+ Published: NOV 7 2017
  • Structural and dynamic insights into the role of conformational switching in the nuclease activity of the Xanthomonas albilineans Cas2 in CRISPR-mediated adaptive immunity Ka, Donghyun; Hong, Suji; Jeong, Ugeene; et al. STRUCTURAL DYNAMICS Volume: 4 Issue: 5 Article Number: 054701 Published: SEP 2017
  • The structure of Plasmodium falciparum 3D7_0606800 reveals a bi-lobed architecture that supports re-annotation as a Venus Flytrap protein Parker, Michelle L.; Ramaswamy, Raghavendran; van Gordon, Kyle; et al. PROTEIN SCIENCE Volume: 26 Issue: 9 Pages: 1878-1885 Published: SEP 2017
  • A coarse-grained method to predict the open-to-closed behavior of glutamine binding protein Lv, Dashuai; Gong, Weikang; Zhang, Yue; et al. CHEMICAL PHYSICS Volume: 493 Pages: 166-174 Published: AUG 17 2017
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  • Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case Hu, Guang; Di Paola, Luisa; Liang, Zhongjie; et al. BIOMED RESEARCH INTERNATIONAL Article Number: 2483264 Published: 2017
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  • An Integrative Approach to the Study of Filamentous Oligomeric Assemblies, with Application to RecA Boyer, Benjamin; Ezelin, Johann; Poulain, Pierre; Saladin, Adrien; Zacharias, Martin; Robert, Charles H.; Prevost, Chantal PLOS ONE Volume: 10 Issue: 3 Article Number: UNSP e0116414 DOI: 10.1371/journal.pone.0116414 Published: MAR 18 2015
  • The Interaction of RNA Helicase DDX3 with HIV-1 Rev-CRM1-RanGTP Complex during the HIV Replication Cycle Mahboobi, Seyed Hanif; Javanpour, Alex A.; Mofrad, Mohammad R. K. PLOS ONE Volume: 10 Issue: 2 Article Number: e0112969 DOI: 10.1371/journal.pone.0112969 Published: FEB 27 2015
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